BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB012E11LP1|AL426385
(804 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1657 1290 0.0
>3x_Contig1657
Length = 14558
Score = 1290 bits (641), Expect = 0.0
Identities = 709/739 (95%), Gaps = 3/739 (0%)
Strand = Plus / Minus
Query: 1 tggagttttcaaagttttacaattatagcactgcgttggcggtttatttgctttagcacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1946 tggagttttcaaagttttacaattatagcactgcgttggcggtttatttgctttagcacc 1887
Query: 61 attgttcacgggaggtccgttcatgacttgcatatttgtcgacgaagaacaccttctata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1886 attgttcacgggaggtccgttcatgacttgcatatttgtcgacgaagaacaccttctata 1827
Query: 121 ctgaggtagagtggttgtcggaaggtttttcacagaggaatttttcttgacaagattggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1826 ctgaggtagagtggttgtcggaaggtttttcacagaggaatttttcttgacaagattggt 1767
Query: 181 agtagtgtgtgtmagtmgaggtagagccccatcttcattcatgtcatttttmataagaag 240
|||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1766 agtagtgtgtgtaagtagaggtagagccccatcttcattcatgtcatttttaataagaag 1707
Query: 241 atttctggaactacttcttcgcggaagttgaggttgtttatgttggtattcatctgcttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1706 atttctggaactacttcttcgcggaagttgaggttgtttatgttggtattcatctgcttt 1647
Query: 301 gattgttgactgactagagttattgttttggaataatctagggtgttggtacgccaaaga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1646 gattgttgactgactagagttattgttttggaataatctagggtgttggtacgccaaaga 1587
Query: 361 gctgctgttcggtccattatcatgttgctggtgtaacaagtgattccaactgttttggaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1586 gctgctgttcggtccattatcatgttgctggtgtaacaagtgattccaactgttttggaa 1527
Query: 421 atgcgaatyagagttggtattatyatyatyatyatygtygccgttattattgccattatt 480
|||||||| |||||||||||||| || || || || || |||||||||||||||||||||
Sbjct: 1526 atgcgaattagagttggtattattattattattattgttgccgttattattgccattatt 1467
Query: 481 gtaattatta-tyagttatggacgccgtgctagatgcgggattgaagccaggtgtagttg 539
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1466 gtaattattatttagttatggacgccgtgctagatgcgggattgaagccaggtgtagttg 1407
Query: 540 ttcctggagtgaattgttctgagttgaaagatgacggggcacttatcgttgcggaatcac 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1406 ttcctggagtgaattgttctgagttgaaagatgacggggcacttatcgttgcggaatcac 1347
Query: 600 tatgatcactcggcgtcatcataaattcatggacattaammtcccagagttgagccattt 659
||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 1346 tatgatcactcggcgtcatcataaattcatggacattaaaatcccagagttgagcaattt 1287
Query: 660 caccattttgc-cattcaagtagttaaaaattaaatggaatgaagttgttgatggtgt-a 717
||||||||||| |||||||| ||| |||||| ||| || ||||||||||||||| |
Sbjct: 1286 caccattttgcaaattcaagtcgttcccaattaactggcctgcagttgttgatggtgtaa 1227
Query: 718 mamtttgaamaatatmtat 736
| |||||| ||||| |||
Sbjct: 1226 cactttgaacaatatctat 1208
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.39 0.714 1.32
Gapped
Lambda K H
1.39 0.714 1.32
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5503
Number of Sequences: 1807
Number of extensions: 5503
Number of successful extensions: 151
Number of sequences better than 1.0e-20: 1
length of query: 804
length of database: 10,358,551
effective HSP length: 16
effective length of query: 788
effective length of database: 10,329,639
effective search space: 8139755532
effective search space used: 8139755532
T: 0
A: 40
X1: 5 (10.1 bits)
X2: 14 (28.2 bits)
S1: 12 (24.6 bits)
S2: 50 (101.1 bits)